The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling).
In Type IV pilus its role is 3-dehydroquinate synthase (EC 4.2.3.4). However, the functionality of this subsystem has not yet been classified for this organism.
We have assigned the function "3-dehydroquinate synthase (EC 4.2.3.4) # AroB" to the encoded
protein. The protein occurs in 3 subsystems: "Chorismate Synthesis", "Common Pathway For Synthesis
of Aromatic Compounds (DAHP synthase to chorismate)", and "Type IV pilus". In "Chorismate
Synthesis", it appears to play a functional role that we have not associated with any other gene,
and it occurs in close proximity on the chromosome with another gene from the same subsystem. In
"Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate)", it appears to
play a functional role that we have not associated with any other gene, and it occurs in close
proximity on the chromosome with another gene from the same subsystem. In "Type IV pilus", it
appears to play a functional role that we have not associated with any other gene.
Compare Regions
The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.
Topic revision: r6 - 02 Mar 2009 - 22:06:54 - Bruce Parrello